Installing Beast with Beagle-lib supportΒΆ

Install Beast in /share/apps/BEASTv2.1.3

Install Beagle-lib

Use: autoconf (GNU Autoconf) 2.69 and you may need to manually edit configure.ac line 388 and hard code to “hmsbeagle-1.pc” ./autogen.sh ./configure --prefix=/share/apps make install

Edit /share/apps/BEASTv2.1.3/bin/beast and add /share/apps/lib to java.library.path:

java -Xms256m -Xmx1024m -Djava.library.path="$BEAST_LIB:/usr/local/bin:/share/apps/lib" -cp "$BEAST_LIB/beast.jar" beast.app.beastapp.BeastMain $*

Test with:

$ beast -beagle_info