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Installing Beast with Beagle-lib support
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Install Beast in ``/share/apps/BEASTv2.1.3``

`Install Beagle-lib <http://code.google.com/p/beagle-lib/wiki/LinuxInstallInstructions>`_  

Use: autoconf (GNU Autoconf) 2.69 and you may need to manually edit configure.ac
line 388 and hard code to "hmsbeagle-1.pc"
``./autogen.sh``
``./configure --prefix=/share/apps``
``make install``


Edit ``/share/apps/BEASTv2.1.3/bin/beast`` and add ``/share/apps/lib`` to java.library.path:

::

    java -Xms256m -Xmx1024m -Djava.library.path="$BEAST_LIB:/usr/local/bin:/share/apps/lib" -cp "$BEAST_LIB/beast.jar" beast.app.beastapp.BeastMain $*

Test with::
    
    $ beast -beagle_info