Installing Bio++ libraries and programme suiteΒΆ

  1. Install cmake

    $ sudo yum install cmake
    
  2. From the sources repository, get

    $ wget http://biopp.univ-montp2.fr/Repositories/sources/bpp-core-2.0.1.tar.gz
    $ tar zxvf bpp-core-2.0.1.tar.gz && cd bpp-core-2.0.1
    $ cmake -DCMAKE_INSTALL_PREFIX=/share/apps
    
    • The CXX compiler identification is GNU
    • Check for working CXX compiler: /usr/bin/c++
    • Check for working CXX compiler: /usr/bin/c++ – works
    • Detecting CXX compiler ABI info
    • Detecting CXX compiler ABI info - done
    • Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
    • CTest cannot determine repository type. Please set UPDATE_TYPE to ‘cvs’ or ‘svn’. CTest update will not work.
    • Configuring done
    • Generating done
    • Build files have been written to: /usr/local/src/bio++/bpp-core-2.0.1
    $ make install
    
  3. Repeat for (in this order)

    • bpp-utils-1.5.0.tar.gz
    • bpp-numcalc-1.8.0.tar.gz
    • bpp-seq-2.0.1.tar.gz
    • bpp-phyl-2.0.1.tar.gz
    • bpp-popgen-2.0.1.tar.gz
    • bpp-raa-2.0.1.tar.gz
    • bppsuite-0.6.1.tar.gz